Yes, the Mk I's have a slightly better BC than the Mk II's. I've tested both extensively, and have posted the results in the Pellets forum.
I just finished testing both again at 95F and have tested them at various temps from 15F up to 95F to see how the BC's change. Group wise, both shoot very tight in my RAW with polygon barrel, but the Mk II's seem to throw out an occasional flyer that the Mk I's don't, so I consider the Mk I's more consistent in my setup. Others (I think particularly in FX guns?) seem to prefer the Mk II's better.
I'm working on compiling a temperature vs. BC comparison to share shortly. Look in the 'Pellets' forum for that information. As a side note: this thread really should be moved to that forum since it's about pellets...
Sean